Stem-loop ptr-mir-342

Accession

MI0008629

Description

Pan troglodytes ptr-mir-342 precursor miRNA

Literature search

1 open access papers mention ptr-mir-342
(1 sentences)

Sequence

14454 reads, 122.0 reads per million, 24 experiments

aaacugggcucaaggugAGGGGUGCUAUCUGUGAUUGAGGgacauggcuaauggaauugUCUCACACAGAAAUCGCACCCGUcaccuuggccuacuua
....(((((.((((((((.((((((..((((((.....((((((...((...))...)))))).))))))....)))))).)))))))))))))....

Structure

aaac     u        G      --UA      AUUGA      ugg  a 
    ugggc caaggugA GGGUGC    UCUGUG     GGgaca   cu  
    ||||| |||||||| ||||||    ||||||     ||||||   || a
    auccg guuccacU CCCACG    AGACAC     CUCUgu   gg  
auuc     -        G      CUAA      ----A      uaa  u 

Annotation confidence High

Genome context

chr14: 85331362-85331459 [+]

Mature ptr-miR-342-5p

• Accession: MIMAT0052333
• Description: Pan troglodytes ptr-miR-342-5p mature miRNA
• Sequence: 18 - AGGGGUGCUAUCUGUGAUUGAGG - 40
• Evidence: not_experimental

Mature ptr-miR-342-3p

• Accession: MIMAT0008110
• Description: Pan troglodytes ptr-miR-342-3p mature miRNA
• Sequence: 60 - UCUCACACAGAAAUCGCACCCGU - 82
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70