Stem-loop ptr-mir-346

Accession

MI0008631

Description

Pan troglodytes ptr-mir-346 precursor miRNA

Literature search

1 open access papers mention ptr-mir-346
(1 sentences)

Sequence

397 reads, 5.0 reads per million, 17 experiments

ggucucuguguugggcgucUGUCUGCCCGCAUGCCUGCCUCUcuguugcucugaaggAGGCAGGGGCUGGGCCUGCAGcugccugggcagagcg
.(.((((((..((((((.((((..((((((...((((((((.((..........)))))))))).)).))))..)))).)))))).))))))).

Structure

g u      gu      u    CU    -  AUG        U  guug 
 g cucugu  ugggcg cUGU  GCCC GC   CCUGCCUC cu    c
 | ||||||  |||||| ||||  |||| ||   |||||||| ||     
 c gagacg  guccgu GACG  CGGG CG   GGACGGAg ga    u
g -      -g      c    UC    U  --G        -  aguc 

Annotation confidence High

Genome context

chr10: 87573011-87573104 [-]

Mature ptr-miR-346-5p

• Accession: MIMAT0008112
• Description: Pan troglodytes ptr-miR-346-5p mature miRNA
• Sequence: 20 - UGUCUGCCCGCAUGCCUGCCUCU - 42
• Evidence: not_experimental

Mature ptr-miR-346-3p

• Accession: MIMAT0052335
• Description: Pan troglodytes ptr-miR-346-3p mature miRNA
• Sequence: 58 - AGGCAGGGGCUGGGCCUGCAG - 78
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70