Stem-loop ptr-mir-34b

Accession

MI0008632

Description

Pan troglodytes ptr-mir-34b precursor miRNA

Literature search

4 open access papers mention ptr-mir-34b
(8 sentences)

Sequence

4374 reads, 425.0 reads per million, 15 experiments

ugcucgguuuguAGGCAGUGUCAUUAGCUGAUUGUacuguggugguuacAAUCACUAACUCCACUGCCAUCaaaacaaggcac
((((..((((...(((((((...((((.((((((((((.....)).))))))))))))...)))))))....))))..)))).

Structure

-    cg    -guA       UCA    C        -  g 
 ugcu  guuu    GGCAGUG   UUAG UGAUUGUa cu u
 ||||  ||||    |||||||   |||| |||||||| || g
 acgg  caaa    CCGUCAC   AAUC ACUAAcau gg g
c    aa    aCUA       CUC    -        u  u 

Annotation confidence High

Genome context

chr11: 111895234-111895316 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-34b

Mature ptr-miR-34b-5p

• Accession: MIMAT0052336
• Description: Pan troglodytes ptr-miR-34b-5p mature miRNA
• Sequence: 13 - AGGCAGUGUCAUUAGCUGAUUGU - 35
• Evidence: not_experimental

Mature ptr-miR-34b-3p

• Accession: MIMAT0008113
• Description: Pan troglodytes ptr-miR-34b-3p mature miRNA
• Sequence: 50 - AAUCACUAACUCCACUGCCAUC - 71
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70