Stem-loop ptr-mir-34c

Accession

MI0008633

Description

Pan troglodytes ptr-mir-34c precursor miRNA

Literature search

7 open access papers mention ptr-mir-34c
(29 sentences)

Sequence

568380 reads, 34165.0 reads per million, 24 experiments

gucuaguuacuAGGCAGUGUAGUUAGCUGAUUGCUaauaguaccAAUCACUAACCACACGGCCAGGUaaaaagauu
((((..(((((.(((.((((.(((((.((((((.((....)).))))))))))).)))).))).)))))..)))).

Structure

-    ag     A   A    A     C      C  a 
 gucu  uuacu GGC GUGU GUUAG UGAUUG Ua u
 ||||  ||||| ||| |||| ||||| |||||| ||  
 uaga  aaUGG CCG CACA CAAUC ACUAAc au a
u    aa     A   G    C     -      c  g 

Annotation confidence High

Genome context

chr11: 111895735-111895810 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-34c

Mature ptr-miR-34c-5p

• Accession: MIMAT0052337
• Description: Pan troglodytes ptr-miR-34c-5p mature miRNA
• Sequence: 12 - AGGCAGUGUAGUUAGCUGAUUGCU - 35
• Evidence: not_experimental

Mature ptr-miR-34c-3p

• Accession: MIMAT0008114
• Description: Pan troglodytes ptr-miR-34c-3p mature miRNA
• Sequence: 45 - AAUCACUAACCACACGGCCAGGU - 67
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70