miRBase entry: ptr-mir-374a

Stem-loop ptr-mir-374a


Accession
MI0008643
Description
Pan troglodytes ptr-mir-374a precursor miRNA


Sequence

5073 reads, 49.0 reads per million, 24 experiments
uacaucggccaUUAUAAUACAACCUGAUAAGUGUuauagcaCUUAUCAGAUUGUAUUGUAAUUgucugugu
.((((.(((.((((((((((((.(((((((((((....))))))))))).)))))))))))).))).))))

Structure
u    c   c            C           u 
 acau ggc aUUAUAAUACAA CUGAUAAGUGU a
 |||| ||| |||||||||||| |||||||||||  
 ugug cug UAAUGUUAUGUU GACUAUUCacg u
-    u   U            A           a 


Annotation confidence High
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Genome context
chrX: 73670202-73670272 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-374a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-374a-5p

Accession MIMAT0008123
Description Pan troglodytes ptr-miR-374a-5p mature miRNA
Sequence 12 - UUAUAAUACAACCUGAUAAGUGU - 34
Evidence not_experimental

Mature ptr-miR-374a-3p

Accession MIMAT0052344
Description Pan troglodytes ptr-miR-374a-3p mature miRNA
Sequence 42 - CUUAUCAGAUUGUAUUGUAAUU - 63
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70