Stem-loop ptr-mir-376a-1

Accession

MI0008646

Description

Pan troglodytes ptr-mir-376a-1 precursor miRNA

Literature search

1 open access papers mention ptr-mir-376a-1
(2 sentences)

Sequence

373 reads, 4.0 reads per million, 20 experiments

aaaagGUAGAUUCUCCUUCUAUGAGUACauuauuuaugauuaAUCAUAGAGGAAAAUCCACGUuuuc
((((.((.((((.((((.((((((...(((.....))).....)))))))))).)))).)).)))).

Structure

-    g  A    C    U      --GUA   u 
 aaaa GU GAUU UCCU CUAUGA     Cau a
 |||| || |||| |||| ||||||     ||| u
 uuuU CA CUAA AGGA GAUACU     gua u
c    G  C    A    -      Aauua   u 

Annotation confidence High

Genome context

chr14: 86289030-86289096 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from ptr-mir-376a-1

Mature ptr-miR-376a-1-5p

• Accession: MIMAT0052346
• Description: Pan troglodytes ptr-miR-376a-1-5p mature miRNA
• Sequence: 6 - GUAGAUUCUCCUUCUAUGAGUAC - 28
• Evidence: not_experimental

Mature ptr-miR-376a-3p

• Accession: MIMAT0008126
• Description: Pan troglodytes ptr-miR-376a-3p mature miRNA
• Sequence: 43 - AUCAUAGAGGAAAAUCCACGU - 63
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70