Stem-loop ptr-mir-376c

Accession

MI0008649

Description

Pan troglodytes ptr-mir-376c precursor miRNA

Literature search

2 open access papers mention ptr-mir-376c
(4 sentences)

Sequence

2576 reads, 21.0 reads per million, 24 experiments

aaagGUGGAUAUUCCUUCUAUGUUUauguuauuuaugguuaAACAUAGAGGAAAUUCCACGUUuu
(((.(((((..(((((.(((((((((.............))))))))))))))..))))).))).

Structure

-   g     UA     U         uguua 
 aaa GUGGA  UUCCU CUAUGUUUa     u
 ||| |||||  ||||| |||||||||     u
 uUU CACCU  AAGGA GAUACAAau     u
u   G     UA     -         uggua 

Annotation confidence High

Genome context

chr14: 86287939-86288003 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from ptr-mir-376c

Mature ptr-miR-376c-5p

• Accession: MIMAT0052348
• Description: Pan troglodytes ptr-miR-376c-5p mature miRNA
• Sequence: 5 - GUGGAUAUUCCUUCUAUGUUU - 25
• Evidence: not_experimental

Mature ptr-miR-376c-3p

• Accession: MIMAT0008128
• Description: Pan troglodytes ptr-miR-376c-3p mature miRNA
• Sequence: 42 - AACAUAGAGGAAAUUCCACGUU - 63
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70