Stem-loop ptr-mir-377

Accession

MI0008650

Description

Pan troglodytes ptr-mir-377 precursor miRNA

Literature search

1 open access papers mention ptr-mir-377
(2 sentences)

Sequence

546 reads, 5.0 reads per million, 22 experiments

ugagcAGAGGUUGCCCUUGGUGAAUUCgcuuuauuuauguugaAUCACACAAAGGCAACUUUUGUUug
.((((((((((((((.(((((((.(((((.........).)))))))).))).)))))))))))))).

Structure

u              C   -    A    - uuu 
 gagcAGAGGUUGCC UUG GUGA UUCg c   a
 |||||||||||||| ||| |||| |||| |   u
 uUUGUUUUCAACGG AAC CACU Aagu g   u
g              A   A    -    u uau 

Annotation confidence High

Genome context

chr14: 86310299-86310366 [+]

Clustered miRNAs

13 other miRNAs are < 10 kb from ptr-mir-377

Mature ptr-miR-377-5p

• Accession: MIMAT0052349
• Description: Pan troglodytes ptr-miR-377-5p mature miRNA
• Sequence: 6 - AGAGGUUGCCCUUGGUGAAUUC - 27
• Evidence: not_experimental

Mature ptr-miR-377-3p

• Accession: MIMAT0008129
• Description: Pan troglodytes ptr-miR-377-3p mature miRNA
• Sequence: 44 - AUCACACAAAGGCAACUUUUGUU - 66
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70