Stem-loop ptr-mir-409

Accession

MI0008657

Description

Pan troglodytes ptr-mir-409 precursor miRNA

Literature search

1 open access papers mention ptr-mir-409
(2 sentences)

Sequence

3060 reads, 28.0 reads per million, 24 experiments

gguacucggggagAGGUUACCCGAGCAACUUUGCAUcuggacgacGAAUGUUGCUCGGUGAACCCCUUuucgguauca
(((((.(((((((.((((..((((((((((((((........).)))).)))))))))..)))).)))))))))))).

Structure

-     u       A    AC         -    - AUc 
 gguac cggggag GGUU  CCGAGCAAC UUUG C   u
 ||||| ||||||| ||||  ||||||||| |||| |    
 cuaug gcuuUUC CCAA  GGCUCGUUG AAGc g   g
a     -       C    GU         U    a cag 

Annotation confidence High

Genome context

chr14: 86313550-86313627 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from ptr-mir-409

Mature ptr-miR-409-5p

• Accession: MIMAT0052355
• Description: Pan troglodytes ptr-miR-409-5p mature miRNA
• Sequence: 14 - AGGUUACCCGAGCAACUUUGCAU - 36
• Evidence: not_experimental

Mature ptr-miR-409-3p

• Accession: MIMAT0008136
• Description: Pan troglodytes ptr-miR-409-3p mature miRNA
• Sequence: 46 - GAAUGUUGCUCGGUGAACCCCUU - 68
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70