Stem-loop ptr-mir-424

Accession

MI0008664

Description

Pan troglodytes ptr-mir-424 precursor miRNA

Literature search

3 open access papers mention ptr-mir-424
(12 sentences)

Sequence

14173 reads, 336.0 reads per million, 24 experiments

cgaggggauaCAGCAGCAAUUCAUGUUUUGAaguguucuaaaugguucAAAACGUGAGGCGCUGCUAUAcccccucguggggaagguagaagguggg
(((((((.((.((((((..(((((((((((((.((((...)))).)))))))))))))..)))))).)).)))))))....................

Structure

--------------------       a  C      AA             g    c 
                    cgagggg ua AGCAGC  UUCAUGUUUUGAa uguu  
                    ||||||| || ||||||  ||||||||||||| |||| u
                    gcucccc AU UCGUCG  GAGUGCAAAAcuu guaa  
ggguggaagauggaaggggu       c  A      CG             g    a 

Annotation confidence High

Genome context

chrX: 134417241-134417337 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from ptr-mir-424

Mature ptr-miR-424-5p

• Accession: MIMAT0008143
• Description: Pan troglodytes ptr-miR-424-5p mature miRNA
• Sequence: 11 - CAGCAGCAAUUCAUGUUUUGA - 31
• Evidence: not_experimental

Mature ptr-miR-424-3p

• Accession: MIMAT0052358
• Description: Pan troglodytes ptr-miR-424-3p mature miRNA
• Sequence: 49 - AAAACGUGAGGCGCUGCUAUA - 69
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70