Stem-loop ptr-mir-425

Accession

MI0008665

Description

Pan troglodytes ptr-mir-425 precursor miRNA

Literature search

2 open access papers mention ptr-mir-425
(2 sentences)

Sequence

4275 reads, 54.0 reads per million, 24 experiments

gaaagcgcuuuggAAUGACACGAUCACUCCCGUUGAGUgggcacccgagaagccAUCGGGAAUGUCGUGUCCGCCcagugcucuuu
.((((.((.((((...(((((((.((.(((((....((((............))))))))).)))))))))...)))).)).))))

Structure

g    c  u    AAU       U  C     UUGA    gcacc 
 aaag gc uugg   GACACGA CA UCCCG    GUgg     c
 |||| || ||||   ||||||| || |||||    ||||      
 uuuc cg gacC   CUGUGCU GU AGGGC    UAcc     g
-    u  u    CGC       -  A     ----    gaaga 

Annotation confidence High

Genome context

chr3: 50084216-50084301 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-425

Mature ptr-miR-425-5p

• Accession: MIMAT0008144
• Description: Pan troglodytes ptr-miR-425-5p mature miRNA
• Sequence: 14 - AAUGACACGAUCACUCCCGUUGAGU - 38
• Evidence: not_experimental

Mature ptr-miR-425-3p

• Accession: MIMAT0052359
• Description: Pan troglodytes ptr-miR-425-3p mature miRNA
• Sequence: 55 - AUCGGGAAUGUCGUGUCCGCC - 75
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70