Stem-loop ptr-mir-433

Accession

MI0008668

Description

Pan troglodytes ptr-mir-433 precursor miRNA

Literature search

1 open access papers mention ptr-mir-433
(93 sentences)

Sequence

17623 reads, 131.0 reads per million, 24 experiments

cggggagaagUACGGUGAGCCUGUCAUUAUUcagagaggcuagauccucuguguugagaaggAUCAUGAUGGGCUCCUCGGUGUUCuccagg
...((((((...(((.(((((((((((.(((((.(((((......))))).))........))).))))))))))).)))...))))))...

Structure

cgg      gUA   U           U   --------  g     cu 
   ggagaa   CGG GAGCCUGUCAU AUU        ca agagg  a
   ||||||   ||| ||||||||||| |||        || |||||   
   ccuCUU   GCU CUCGGGUAGUA UAg        gu ucucc  g
gga      GUG   C           C   gaagaguu  g     ua 

Annotation confidence High

Genome context

chr14: 86126847-86126938 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from ptr-mir-433

Mature ptr-miR-433-5p

• Accession: MIMAT0052360
• Description: Pan troglodytes ptr-miR-433-5p mature miRNA
• Sequence: 11 - UACGGUGAGCCUGUCAUUAUU - 31
• Evidence: not_experimental

Mature ptr-miR-433-3p

• Accession: MIMAT0008147
• Description: Pan troglodytes ptr-miR-433-3p mature miRNA
• Sequence: 63 - AUCAUGAUGGGCUCCUCGGUGUUC - 86
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70