Stem-loop ptr-mir-449a

Accession

MI0008670

Description

Pan troglodytes ptr-mir-449a precursor miRNA

Literature search

3 open access papers mention ptr-mir-449a
(9 sentences)

Sequence

63726 reads, 3979.0 reads per million, 24 experiments

ugugugugaugagcUGGCAGUGUAUUGUUAGCUCGUUGaauaugugaauggcaUCGGCUAACAUGCAACUGCUGUCuuauugcauauaca
(((((((((((((.(((((((((((.((((((.((.((..(((....))).)).)))))))))))).))))))).)))))))))))))..

Structure

--             c       -    U      U  U  aa   g 
  ugugugugaugag UGGCAGU GUAU GUUAGC CG UG  uau u
  ||||||||||||| ||||||| |||| |||||| || ||  |||  
  auauacguuauuC GUCGUCA CGUA CAAUCG GC ac  gua g
ac             U       A    -      -  U  -g   a 

Annotation confidence High

Genome context

chr5: 59474635-59474724 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptr-mir-449a

Mature ptr-miR-449a-5p

• Accession: MIMAT0008149
• Description: Pan troglodytes ptr-miR-449a-5p mature miRNA
• Sequence: 15 - UGGCAGUGUAUUGUUAGCUCGUUG - 38
• Evidence: not_experimental

Mature ptr-miR-449a-3p

• Accession: MIMAT0052361
• Description: Pan troglodytes ptr-miR-449a-3p mature miRNA
• Sequence: 54 - UCGGCUAACAUGCAACUGCUGUC - 76
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70