Stem-loop ptr-mir-449b

Accession

MI0008671

Description

Pan troglodytes ptr-mir-449b precursor miRNA

Literature search

1 open access papers mention ptr-mir-449b
(2 sentences)

Sequence

711 reads, 54.0 reads per million, 19 experiments

gaccugaaucagguAGGCAGUGUAUUGUUAGCUGGCUGCUugggucaagucagCAGCCACAACUACCCUGCCACUUgcuucuggauaaauucuucu
..((.(((.(((((.(((((.(((..(((.(.((((((((.((......))))))))))))))))).)))))))))).))).))............

Structure

----------ga  u   u     A     U   UU   A C        u  gu 
            cc gaa caggu GGCAG GUA  GUU G UGGCUGCU gg  c
            || ||| ||||| ||||| |||  ||| | |||||||| ||   
            gg cuu gUUCA CCGUC CAU  CAA C ACCGACga cu  a
ucuucuuaaaua  u   c     -     C   --   - -        -  ga 

Annotation confidence High

Genome context

chr5: 59474515-59474610 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptr-mir-449b

Mature ptr-miR-449b-5p

• Accession: MIMAT0008150
• Description: Pan troglodytes ptr-miR-449b-5p mature miRNA
• Sequence: 15 - AGGCAGUGUAUUGUUAGCUGGCUGCU - 40
• Evidence: not_experimental

Mature ptr-miR-449b-3p

• Accession: MIMAT0052362
• Description: Pan troglodytes ptr-miR-449b-3p mature miRNA
• Sequence: 54 - CAGCCACAACUACCCUGCCACUU - 76
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70