Stem-loop ptr-mir-485

Accession

MI0008681

Description

Pan troglodytes ptr-mir-485 precursor miRNA

Literature search

2 open access papers mention ptr-mir-485
(2 sentences)

Sequence

44947 reads, 355.0 reads per million, 24 experiments

cuuggagAGAGGCUGGCCGUGAUGAAUUCGauucaucaaagcgaGUCAUACACGGCUCUCCUCUCUUuuagu
((.(((((((((..(((((((((((.((((...........)))))))).)))))))..))))))))).)).

Structure

-  u         CU       -    A    auuc 
 cu ggagAGAGG  GGCCGUG AUGA UUCG    a
 || |||||||||  ||||||| |||| ||||    u
 ga uUUCUCUCC  UCGGCAC UACU Gagc    c
u  u         UC       A    -    gaaa 

Annotation confidence High

Genome context

chr14: 86303654-86303725 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from ptr-mir-485

Mature ptr-miR-485-5p

• Accession: MIMAT0052366
• Description: Pan troglodytes ptr-miR-485-5p mature miRNA
• Sequence: 8 - AGAGGCUGGCCGUGAUGAAUUCG - 30
• Evidence: not_experimental

Mature ptr-miR-485-3p

• Accession: MIMAT0008159
• Description: Pan troglodytes ptr-miR-485-3p mature miRNA
• Sequence: 45 - GUCAUACACGGCUCUCCUCUCUU - 67
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70