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miRBase entry: ptr-mir-486
How is the hairpin structure generated?
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We have generated a dot-bracket structure for each sequence using RNAfold.
Unambiguous secondary structure.
Parsed and ASCII art drawn.
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Stem-loop
ptr-mir-486
Accession
MI0008682
Description
Pan troglodytes
ptr-mir-486 precursor miRNA
Sequence
gcaUCCUGUACUGAGCUGCCCCGAGgcccuucaugcugcccagcucggggcagcucaguacaggaua
..(((((((((((((((((((((((..................))))))))))))))))))))))).
Structure
gc gcccuuca aUCCUGUACUGAGCUGCCCCGAG u ||||||||||||||||||||||| uaggacaugacucgacggggcuc g -a gacccguc
Annotation confidence
Not enough data
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Genome context
chr8: 41373748-41373814 [-]
Database links
Mature
ptr-miR-486
Accession
MIMAT0008160
Description
Pan troglodytes
ptr-miR-486 mature miRNA
Sequence
4 - UCCUGUACUGAGCUGCCCCGAG - 25
Evidence
not_experimental
References
PubMed ID:
18760970
Computational identification of novel microRNA homologs in the chimpanzee genome
"Baev V, Daskalova E, Minkov I"
"Comput Biol Chem (2009) 33:62-70