Stem-loop ptr-mir-488

Accession

MI0008685

Description

Pan troglodytes ptr-mir-488 precursor miRNA

Sequence

1239 reads, 15.0 reads per million, 16 experiments

gagaaucaucucuCCCAGAUAAUGGCACUCUCAAAcaaguuuucaaauuguUUGAAAGGCUAUUUCUUGGUcagaugacucu
.(((.((((((..((.(((.((((((.((.((((((((.........)))))))).))))))))))).))..)))))).)))

Structure

g   a      cu  C   U      A  C        guu 
 aga ucaucu  CC AGA AAUGGC CU UCAAAcaa   u
 ||| ||||||  || ||| |||||| || ||||||||   u
 ucu aguaga  GG UCU UUAUCG GA AGUUuguu   c
-   c      cU  U   -      -  A        aaa 

Annotation confidence High

Genome context

chr1: 155552474-155552555 [-]

Mature ptr-miR-488-5p

• Accession: MIMAT0052370
• Description: Pan troglodytes ptr-miR-488-5p mature miRNA
• Sequence: 14 - CCCAGAUAAUGGCACUCUCAAA - 35
• Evidence: not_experimental

Mature ptr-miR-488-3p

• Accession: MIMAT0008163
• Description: Pan troglodytes ptr-miR-488-3p mature miRNA
• Sequence: 52 - UUGAAAGGCUAUUUCUUGGU - 71
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70