Stem-loop ptr-mir-490

Accession

MI0008687

Description

Pan troglodytes ptr-mir-490 precursor miRNA

Literature search

1 open access papers mention ptr-mir-490
(3 sentences)

Sequence

2079 reads, 16.0 reads per million, 24 experiments

ggaggccuugcugguuuggaaaguucauuguucgacaCCAUGGAUCUCCAGGUGGGUcaaguuuagagaugcacCAACCUGGAGGACUCCAUGCUGUUgagcuguucacaagcagcggacacuucca
(((((..((((((.(((((((........((((((((.(((((((((((((((.(((((..........)).))).)))))))))..)))))).))))))))..))).))))))))))...))))).

Structure

-     -cc      g    -   aguucauu        C      --         G   -  aguu 
 ggagg   uugcug uuug gaa        guucgaca CAUGGA  UCUCCAGGU GGU ca    u
 |||||   |||||| |||| |||        |||||||| ||||||  ||||||||| ||| ||     
 ccuuc   ggcgac gaac cuu        cgagUUGU GUACCU  GGAGGUCCA Cca gu    a
a     aca      -    a   ------gu        C      CA         A   c  agag 

Annotation confidence High

Genome context

chr7: 141461802-141461928 [+]

Mature ptr-miR-490-5p

• Accession: MIMAT0052371
• Description: Pan troglodytes ptr-miR-490-5p mature miRNA
• Sequence: 38 - CCAUGGAUCUCCAGGUGGGU - 57
• Evidence: not_experimental

Mature ptr-miR-490-3p

• Accession: MIMAT0008165
• Description: Pan troglodytes ptr-miR-490-3p mature miRNA
• Sequence: 75 - CAACCUGGAGGACUCCAUGCUGUU - 98
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70