Stem-loop ptr-mir-499

Accession

MI0008694

Description

Pan troglodytes ptr-mir-499 precursor miRNA

Literature search

2 open access papers mention ptr-mir-499
(2 sentences)

Sequence

143146 reads, 999.0 reads per million, 24 experiments

cccuguccccugugccuugggcgggcagcugUUAAGACUUGCAGUGAUGUUUaacuccucuccacgugAACAUCACAGCAAGUCUGUGCUgcuucccgucccuacgcugccugggcagggu
((((((((.....((...(((((((.(((.((..((((((((.((((((((((.............)))))))))).))))))))..)).))).)))).)))...)).....)))))))).

Structure

-        ccugu  cuu   -    c   u  UA        A          acucc 
 cccugucc     gc   ggg cggg agc gU  AGACUUGC GUGAUGUUUa     u
 ||||||||     ||   ||| |||| ||| ||  |||||||| ||||||||||     c
 gggacggg     cg   ccc gccc ucg CG  UCUGAACG CACUACAAgu     u
u        uccgu  cau   u    u   U  UG        A          gcacc 

Annotation confidence High

Genome context

chr20: 36436961-36437081 [+]

Mature ptr-miR-499-5p

• Accession: MIMAT0052374
• Description: Pan troglodytes ptr-miR-499-5p mature miRNA
• Sequence: 32 - UUAAGACUUGCAGUGAUGUUU - 52
• Evidence: not_experimental

Mature ptr-miR-499-3p

• Accession: MIMAT0008172
• Description: Pan troglodytes ptr-miR-499-3p mature miRNA
• Sequence: 69 - AACAUCACAGCAAGUCUGUGCU - 90
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70