Stem-loop ptr-mir-501

Accession

MI0008696

Description

Pan troglodytes ptr-mir-501 precursor miRNA

Literature search

2 open access papers mention ptr-mir-501
(2 sentences)

Sequence

488 reads, 7.0 reads per million, 24 experiments

cucuuccucucuAAUCCUUUGUCCCUGGGUGAGAGUgcuuucugaaugcAAUGCACCCGGGCAAGGAUUCUgagagggugagc
(((.(((((((.(((((((.(.(((.(((((....(((.........)))...))))))))))))))))..))))))).))).

Structure

-   u       -u       U U   U     AGAG   uuu 
 cuc uccucuc  AAUCCUU G CCC GGGUG    Ugc   c
 ||| |||||||  ||||||| | ||| |||||    |||   u
 gag gggagag  UUAGGAA C GGG CCCAC    Acg   g
c   u       UC       - -   -     -GUA   uaa 

Annotation confidence High

Genome context

chrX: 49894484-49894566 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from ptr-mir-501

Mature ptr-miR-501-5p

• Accession: MIMAT0052375
• Description: Pan troglodytes ptr-miR-501-5p mature miRNA
• Sequence: 13 - AAUCCUUUGUCCCUGGGUGAGAGU - 36
• Evidence: not_experimental

Mature ptr-miR-501-3p

• Accession: MIMAT0008174
• Description: Pan troglodytes ptr-miR-501-3p mature miRNA
• Sequence: 50 - AAUGCACCCGGGCAAGGAUUCU - 71
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70