Stem-loop ptr-mir-502

Accession

MI0008697

Description

Pan troglodytes ptr-mir-502 precursor miRNA

Literature search

1 open access papers mention ptr-mir-502
(1 sentences)

Sequence

1731 reads, 22.0 reads per million, 24 experiments

gcucccccucucuAAUCCUUGCUAUCUGGGUGCUAGUgcuggcucaaugcAAUGCACCUGGGCAAGGAUUCAgagagggggagcu
((((((((((((((((((((((...((((((((...(((.........)))..))))))))))))))))).))))))))))))).

Structure

-             -         UAU        UAG   ugg 
 gcucccccucucu AAUCCUUGC   CUGGGUGC   Ugc   c
 ||||||||||||| |||||||||   ||||||||   |||   u
 cgagggggagagA UUAGGAACG   GGUCCACG   Acg   c
u             C         ---        -UA   uaa 

Annotation confidence High

Genome context

chrX: 49899352-49899436 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ptr-mir-502

Mature ptr-miR-502-5p

• Accession: MIMAT0052376
• Description: Pan troglodytes ptr-miR-502-5p mature miRNA
• Sequence: 14 - AAUCCUUGCUAUCUGGGUGCUAGU - 37
• Evidence: not_experimental

Mature ptr-miR-502-3p

• Accession: MIMAT0008175
• Description: Pan troglodytes ptr-miR-502-3p mature miRNA
• Sequence: 51 - AAUGCACCUGGGCAAGGAUUCA - 72
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70