Stem-loop ptr-mir-503

Accession

MI0008698

Description

Pan troglodytes ptr-mir-503 precursor miRNA

Literature search

3 open access papers mention ptr-mir-503
(34 sentences)

Sequence

7223 reads, 134.0 reads per million, 24 experiments

ugcccUAGCAGCGGGAACAGUUCUGCAGUgagcgaucggugcucuGGAGUAUUGUUUCCGCUGCCAGGgu
.(((((.((((((((((((((.((.((..(((((.....))))))).)).)))))))))))))).)))))

Structure

u     A              U  G  GU     a 
 gcccU GCAGCGGGAACAGU CU CA  gagcg u
 ||||| |||||||||||||| || ||  ||||| c
 ugGGA CGUCGCCUUUGUUA GA Gu  cucgu g
-     C              U  G  --     g 

Annotation confidence High

Genome context

chrX: 134416955-134417024 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from ptr-mir-503

Mature ptr-miR-503-5p

• Accession: MIMAT0008176
• Description: Pan troglodytes ptr-miR-503-5p mature miRNA
• Sequence: 6 - UAGCAGCGGGAACAGUUCUGCAGU - 29
• Evidence: not_experimental

Mature ptr-miR-503-3p

• Accession: MIMAT0052377
• Description: Pan troglodytes ptr-miR-503-3p mature miRNA
• Sequence: 46 - GGAGUAUUGUUUCCGCUGCCAGG - 68
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70