Stem-loop ptr-mir-504

Accession

MI0008699

Description

Pan troglodytes ptr-mir-504 precursor miRNA

Literature search

1 open access papers mention ptr-mir-504
(3 sentences)

Sequence

3468 reads, 29.0 reads per million, 24 experiments

gcugcuguugggAGACCCUGGUCUGCACUCUAUCUguauucuuacugaaGGGAGUGCAGGGCAGGGUUUCccauacagaggg
.((.((((((((((((((((.((((((((((.((.(((....))).))..)))))))))).)))))))))))).)))).)).

Structure

g  g    -            G          -A  U   u 
 cu cugu ugggAGACCCUG UCUGCACUCU  UC gua u
 || |||| |||||||||||| ||||||||||  || |||  
 gg gaca accCUUUGGGAC GGACGUGAGG  ag cau c
g  a    u            G          Ga  u   u 

Annotation confidence High

Genome context

chrX: 138550686-138550767 [-]

Mature ptr-miR-504-5p

• Accession: MIMAT0008177
• Description: Pan troglodytes ptr-miR-504-5p mature miRNA
• Sequence: 13 - AGACCCUGGUCUGCACUCUAUCU - 35
• Evidence: not_experimental

Mature ptr-miR-504-3p

• Accession: MIMAT0052378
• Description: Pan troglodytes ptr-miR-504-3p mature miRNA
• Sequence: 50 - GGGAGUGCAGGGCAGGGUUUC - 70
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70