Stem-loop ptr-mir-505

Accession

MI0008700

Description

Pan troglodytes ptr-mir-505 precursor miRNA

Sequence

1990 reads, 16.0 reads per million, 24 experiments

gaugcacccaguggGGGAGCCAGGAAGUAUUGAUGUUUCugccaguuuagCGUCAACACUUGCUGGUUUCCUcucuggagcau
.((((..((((.(((((((((((.((((.((((((((...........)))))))).)))).))))))))))).)))).))))

Structure

g    ac    u           G    A        UCug 
 augc  ccag ggGGGAGCCAG AAGU UUGAUGUU    c
 ||||  |||| ||||||||||| |||| ||||||||    c
 uacg  gguc cUCCUUUGGUC UUCA AACUGCga    a
-    -a    u           G    C        uuug 

Annotation confidence Medium

Genome context

chrX: 139848044-139848126 [-]

Mature ptr-miR-505-5p

• Accession: MIMAT0052379
• Description: Pan troglodytes ptr-miR-505-5p mature miRNA
• Sequence: 15 - GGGAGCCAGGAAGUAUUGAUGUUUC - 39
• Evidence: not_experimental

Mature ptr-miR-505-3p

• Accession: MIMAT0008178
• Description: Pan troglodytes ptr-miR-505-3p mature miRNA
• Sequence: 51 - CGUCAACACUUGCUGGUUUCCU - 72
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70