Stem-loop ptr-mir-512

Accession

MI0008702

Description

Pan troglodytes ptr-mir-512 precursor miRNA

Literature search

1 open access papers mention ptr-mir-512
(4 sentences)

Sequence

131 reads, 28.0 reads per million, 7 experiments

cucagucuguggcacucagccuugagggcacuuucuggugucagaaugaAAGUGCUGUCAUAGCUGAGGUCcaaugacugagg
(((((((..(((..((((((..(((.(((((((((............))))))))).)))..))))))..)))..))))))).

Structure

-       ug   ca      cu   g         uggug 
 cucaguc  ugg  cucagc  uga ggcacuuuc     u
 |||||||  |||  ||||||  ||| |||||||||      
 gagucag  acC  GAGUCG  ACU UCGUGAAag     c
g       ua   UG      AU   G         uaaga 

Annotation confidence Not enough data

Genome context

chr19: 56011919-56012001 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-512

Mature ptr-miR-512-3p

• Accession: MIMAT0008180
• Description: Pan troglodytes ptr-miR-512-3p mature miRNA
• Sequence: 50 - AAGUGCUGUCAUAGCUGAGGUC - 71
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70