Stem-loop ptr-mir-515-1

Accession

MI0008703

Description

Pan troglodytes ptr-mir-515-1 precursor miRNA

Literature search

1 open access papers mention ptr-mir-515-1
(2 sentences)

Sequence

cucaugcagucauucuccaaaagaaagcacuuucuguugucugaaagcaGAGUGCCUUCUUUUGGAGCGUUacuguuugaga
((((.(((((.((.(((((((((((.((((..((((((.......)))))))))).))))))))))).)).))))).)))).

Structure

-    u     c  u           a    uu      gu 
 cuca gcagu au cuccaaaagaa gcac  ucuguu  c
 |||| ||||| || ||||||||||| ||||  ||||||  u
 gagu uguca UG GAGGUUUUCUU CGUG  AGacga  g
a    u     U  C           C    --      aa 

Annotation confidence Not enough data

Genome context

chr19: 56027150-56027231 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from ptr-mir-515-1

Mature ptr-miR-515

• Accession: MIMAT0008181
• Description: Pan troglodytes ptr-miR-515 mature miRNA
• Sequence: 50 - GAGUGCCUUCUUUUGGAGCGUU - 71
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70