Stem-loop ptr-mir-516a-1

Accession

MI0008705

Description

Pan troglodytes ptr-mir-516a-1 precursor miRNA

Sequence

cucaggcugugaccuucucgaggaaagaagcacuuucuguugucugaaagaaaagaaagUGCUUCCUUUCAGAGGGUuacgguuugaga
((((((((((((((((((.((((...((((((((((((....(((...)))..)))))))))))))))).)))))))))))))))))).

Structure

-                  c    aaa            guug   g 
 cucaggcugugaccuucu gagg   gaagcacuuucu    ucu  
 |||||||||||||||||| ||||   ||||||||||||    ||| a
 gaguuuggcauUGGGAGA UUUC   CUUCGUgaaaga    aga  
a                  C    ---            --aa   a 

Annotation confidence Not enough data

Genome context

chr19: 56104159-56104247 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from ptr-mir-516a-1

Mature ptr-miR-516a

• Accession: MIMAT0008182
• Description: Pan troglodytes ptr-miR-516a mature miRNA
• Sequence: 60 - UGCUUCCUUUCAGAGGGU - 77
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70