Stem-loop ptr-mir-518c

Accession

MI0008714

Description

Pan troglodytes ptr-mir-518c precursor miRNA

Sequence

caagaagaucucaugcugugacucucuggagggaagcacuuucuguugucugaaagaaaaCAAAGCGCUUCUCUUUAGAGUGUuacgguuugagaaaagc
........(((((.((((((((.((((((((((((((.(((..((((.(((...))).))))))).)))))))))))))).)))))))).))))).....

Structure

caagaaga     u        u              a   uc    g   g 
        ucuca gcugugac cucuggagggaagc cuu  uguu ucu  
        ||||| |||||||| |||||||||||||| |||  |||| ||| a
        agagu uggcauUG GAGAUUUCUCUUCG GAA  ACaa aga  
---cgaaa     u        U              C   --    a   a 

Annotation confidence Not enough data

Genome context

chr19: 56056864-56056963 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from ptr-mir-518c

Mature ptr-miR-518c

• Accession: MIMAT0008188
• Description: Pan troglodytes ptr-miR-518c mature miRNA
• Sequence: 61 - CAAAGCGCUUCUCUUUAGAGUGU - 83
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70