Stem-loop ptr-mir-518e

Accession

MI0008716

Description

Pan troglodytes ptr-mir-518e precursor miRNA

Literature search

1 open access papers mention ptr-mir-518e
(4 sentences)

Sequence

76 reads, 17.0 reads per million, 7 experiments

cucaggcugugaccCUCUAGAGGGAAGCGCUUUCUGUUggcuaaaagaaaagAAAGCGCUUCCCUUCAGAGUGuuaacgcuuugaga
(((((((..((((.((((.((((((((((((((((...............)))))))))))))))).)))).))))..)).))))).

Structure

-     -  ug    c    A                GUUggc 
 cucag gc  ugac CUCU GAGGGAAGCGCUUUCU      u
 ||||| ||  |||| |||| ||||||||||||||||      a
 gaguu cg  auuG GAGA UUCCCUUCGCGAAAga      a
a     u  ca    U    C                aaagaa 

Annotation confidence High

Genome context

chr19: 56077248-56077334 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from ptr-mir-518e

Mature ptr-miR-518e-5p

• Accession: MIMAT0052382
• Description: Pan troglodytes ptr-miR-518e-5p mature miRNA
• Sequence: 15 - CUCUAGAGGGAAGCGCUUUCUGUU - 38
• Evidence: not_experimental

Mature ptr-miR-518e-3p

• Accession: MIMAT0008190
• Description: Pan troglodytes ptr-miR-518e-3p mature miRNA
• Sequence: 53 - AAAGCGCUUCCCUUCAGAGUG - 73
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70