Stem-loop ptr-mir-521-1

Accession

MI0008731

Description

Pan troglodytes ptr-mir-521-1 precursor miRNA

Sequence

cucaggcugugacccuccaaagggaagaacuuucuguugucuaaaagaaaagAACGCACUUCCCUUUAGAGUGUuaccgugugaga
((((.((.(((((.(((.(((((((((..(.((((....(((...)))..)))).)..))))))))).))).))))).)).)))).

Structure

-    g  u     c   c         aa u    guug   a 
 cuca gc gugac cuc aaagggaag  c uucu    ucu  
 |||| || ||||| ||| |||||||||  | ||||    ||| a
 gagu ug cauUG GAG UUUCCCUUC  G AAga    aga  
a    g  c     U   A         AC C    --aa   a 

Annotation confidence Not enough data

Genome context

chr19: 56096062-56096147 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from ptr-mir-521-1

Mature ptr-miR-521

• Accession: MIMAT0008205
• Description: Pan troglodytes ptr-miR-521 mature miRNA
• Sequence: 53 - AACGCACUUCCCUUUAGAGUGU - 74
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70