Stem-loop ptr-mir-523

Accession

MI0008734

Description

Pan troglodytes ptr-mir-523 precursor miRNA

Literature search

2 open access papers mention ptr-mir-523
(4 sentences)

Sequence

103 reads, 22.0 reads per million, 7 experiments

ugugaccCUCUAGAGGGAAGCGCUUUCUGUUgucugaaagaaaagAACGCGCUUCCCUAUAGAGGGUUacccuuugaga
.(((((((((((.((((((((((.((((....(((...)))..)))).)))))))))).))))))))))).........

Structure

--------u           G          U    GUUg   g 
         gugaccCUCUA AGGGAAGCGC UUCU    ucu  
         ||||||||||| |||||||||| ||||    ||| a
         caUUGGGAGAU UCCCUUCGCG AAga    aga  
agaguuucc           A          C    --aa   a 

Annotation confidence High

Genome context

chr19: 56046532-56046610 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from ptr-mir-523

Mature ptr-miR-523-5p

• Accession: MIMAT0052385
• Description: Pan troglodytes ptr-miR-523-5p mature miRNA
• Sequence: 8 - CUCUAGAGGGAAGCGCUUUCUGUU - 31
• Evidence: not_experimental

Mature ptr-miR-523-3p

• Accession: MIMAT0008207
• Description: Pan troglodytes ptr-miR-523-3p mature miRNA
• Sequence: 46 - AACGCGCUUCCCUAUAGAGGGUU - 68
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70