Stem-loop ptr-mir-532

Accession

MI0008741

Description

Pan troglodytes ptr-mir-532 precursor miRNA

Literature search

1 open access papers mention ptr-mir-532
(2 sentences)

Sequence

15807 reads, 218.0 reads per million, 24 experiments

gacuugcuuucucuccucCAUGCCUUGAGUGUAGGACCGUUggcaucuuaauuacCCUCCCACACCCAAGGCUUGCAgaagagcgagccu
.....((((.((((.((.((.((((((.((((.(((..((.............))..))).)))).)))))).)).)).)))).))))..

Structure

gacuu    u    c  c  U      A    A   CC  Uggca 
     gcuu cucu cu CA GCCUUG GUGU GGA  GU     u
     |||| |||| || || |||||| |||| |||  ||     c
     cgag gaga gA GU CGGAAC CACA CCU  ca     u
---uc    c    a  C  U      C    C   CC  uuaau 

Annotation confidence High

Genome context

chrX: 49887896-49887985 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ptr-mir-532

Mature ptr-miR-532-5p

• Accession: MIMAT0052386
• Description: Pan troglodytes ptr-miR-532-5p mature miRNA
• Sequence: 19 - CAUGCCUUGAGUGUAGGACCGUU - 41
• Evidence: not_experimental

Mature ptr-miR-532-3p

• Accession: MIMAT0008213
• Description: Pan troglodytes ptr-miR-532-3p mature miRNA
• Sequence: 56 - CCUCCCACACCCAAGGCUUGCA - 77
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70