Stem-loop ptr-mir-548a-1

Accession

MI0008746

Description

Pan troglodytes ptr-mir-548a-1 precursor miRNA

Literature search

1 open access papers mention ptr-mir-548a-1
(2 sentences)

Sequence

gcagggagguauuaaguuggugcaaaaguaauugugguuuuugccauuaaaaguaacgaCAAAACUGGCAAUUACUUUUGCaccaaaccugauauu
.......(((((((.((((((((((((((((((((.(.(((((.(.(((....))).).))))).).))))))))))))))))).))).)))))))

Structure

gcaggga       a   -                 g u     c a   a 
       gguauua guu ggugcaaaaguaauugu g uuuug c uua a
       ||||||| ||| ||||||||||||||||| | ||||| | |||  
       uuauagu caa ccaCGUUUUCAUUAACG U AAAAC g aau a
-------       c   a                 G C     a c   g 

Annotation confidence Not enough data

Genome context

chr6: 18773503-18773598 [+]

Mature ptr-miR-548a

• Accession: MIMAT0008218
• Description: Pan troglodytes ptr-miR-548a mature miRNA
• Sequence: 60 - CAAAACUGGCAAUUACUUUUGC - 81
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70