Stem-loop ptr-mir-548a-1

Accession

MI0008746

Description

Pan troglodytes ptr-mir-548a-1 precursor miRNA

Literature search

1 open access papers mention ptr-mir-548a-1
(2 sentences)

Sequence

410 reads, 6.0 reads per million, 24 experiments

gcagggagguauuaaguuggugcAAAAGUAAUUGUGGUUUUUGccauuaaaaguaacgaCAAAACUGGCAAUUACUUUUGCaccaaaccugauauu
.......(((((((.((((((((((((((((((((.(.(((((.(.(((....))).).))))).).))))))))))))))))).))).)))))))

Structure

gcaggga       a   -                 G U     c a   a 
       gguauua guu ggugcAAAAGUAAUUGU G UUUUG c uua a
       ||||||| ||| ||||||||||||||||| | ||||| | |||  
       uuauagu caa ccaCGUUUUCAUUAACG U AAAAC g aau a
-------       c   a                 G C     a c   g 

Annotation confidence Medium

Genome context

chr6: 18773503-18773598 [+]

Mature ptr-miR-548a-1-5p

• Accession: MIMAT0052388
• Description: Pan troglodytes ptr-miR-548a-1-5p mature miRNA
• Sequence: 24 - AAAAGUAAUUGUGGUUUUUG - 43
• Evidence: not_experimental

Mature ptr-miR-548a-3p

• Accession: MIMAT0008218
• Description: Pan troglodytes ptr-miR-548a-3p mature miRNA
• Sequence: 60 - CAAAACUGGCAAUUACUUUUGC - 81
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70