Stem-loop ptr-mir-548a-2

Accession

MI0008747

Description

Pan troglodytes ptr-mir-548a-2 precursor miRNA

Literature search

1 open access papers mention ptr-mir-548a-2
(2 sentences)

Sequence

gugauguguauuagguuugugcaaaaguaacugggguuuuuugccauuaaaaguaaugaCAAAACUGGCAAUUACUUUUGCaccaaacuaauauaa
......((((((((..(.((((((((((((.((.(((((..((.(((((....))))).)))))))..)).)))))))))))).)..)))))))).

Structure

gugaug        gu u            c  -g     uu  c     a 
      uguauuag  u gugcaaaaguaa ug  gguuu  ug cauua a
      ||||||||  | |||||||||||| ||  |||||  || |||||  
      auauaauc  a caCGUUUUCAUU AC  UCAAA  AC guaau a
-----a        aa c            A  GG     --  a     g 

Annotation confidence Not enough data

Genome context

chr6: 139153767-139153862 [+]

Mature ptr-miR-548a

• Accession: MIMAT0008218
• Description: Pan troglodytes ptr-miR-548a mature miRNA
• Sequence: 60 - CAAAACUGGCAAUUACUUUUGC - 81
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70