Stem-loop ptr-mir-548b

Accession

MI0008748

Description

Pan troglodytes ptr-mir-548b precursor miRNA

Literature search

1 open access papers mention ptr-mir-548b
(2 sentences)

Sequence

cagacuauauauuuagguuggcgcaaaaguaauugcaguuuuggccuuuauuuucaauggCAAGAACCUCAGUUGCUUUUGUgccaaccuaauacu
............(((((((((((((((((((((((..(((((.(((............))).)))))..)))))))))))))))))))))))....

Structure

cagacuauauau                       ca     g   uuuau 
            uuagguuggcgcaaaaguaauug  guuuu gcc     u
            |||||||||||||||||||||||  ||||| |||      
            aauccaaccgUGUUUUCGUUGAC  CAAGA Cgg     u
--------ucau                       UC     A   uaacu 

Annotation confidence Not enough data

Genome context

chr6: 122780874-122780969 [-]

Mature ptr-miR-548b

• Accession: MIMAT0008219
• Description: Pan troglodytes ptr-miR-548b mature miRNA
• Sequence: 61 - CAAGAACCUCAGUUGCUUUUGU - 82
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70