Stem-loop ptr-mir-548i-1

Accession

MI0008753

Description

Pan troglodytes ptr-mir-548i-1 precursor miRNA

Literature search

1 open access papers mention ptr-mir-548i-1
(2 sentences)

Sequence

cagauggcuccgaaguuugcacccuauuagguuggugcAAAAGUAAUUGCGGAUUUUGCCauuaaacguaauggcaaaaauagcaauuauuuuuguaccagccuaguaucuuuucuccuucuaccaaacuuugucccugagccaucuc
.((((((((((((((((((.....((((((((((((((((((((((((((...(((((((((((....)))))))))))...))))))))))))))))))))))))))................))))))))).....))))))))).

Structure

c         -----         -----------caccc                          GGA           a 
 agauggcuc     cgaaguuug                uauuagguuggugcAAAAGUAAUUGC   UUUUGCCauua a
 |||||||||     |||||||||                ||||||||||||||||||||||||||   |||||||||||  
 ucuaccgag     guuucaaac                augauccgaccauguuuuuauuaacg   aaaacgguaau c
c         ucccu         caucuuccucuuuucu                          aua           g 

Annotation confidence Not enough data

Genome context

chr3: 129014854-129015001 [-]

Mature ptr-miR-548i

• Accession: MIMAT0008223
• Description: Pan troglodytes ptr-miR-548i mature miRNA
• Sequence: 39 - AAAAGUAAUUGCGGAUUUUGCC - 60
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70