Stem-loop ptr-mir-548i-4

Accession

MI0008756

Description

Pan troglodytes ptr-mir-548i-4 precursor miRNA

Literature search

1 open access papers mention ptr-mir-548i-4
(2 sentences)

Sequence

cagauggcuccgaaguuugcauccuauuagguuggugcAAAAGUAAUUGCGGAUUUUGCCauuaaaaguaauggcaaaaauaacaauuauuuuuuuuaccagccuaguaucuuuucuccuuuaccaaacuuugucccugaaucaucuc
.((((((.(((((((((((.....(((((((((((((.(((((((((((....(((((((((((....)))))))))))....)))))))))))..)))))))))))))...............))))))))).....)).)))))).

Structure

c      c  -----         ----------caucc             -c           CGGA           a 
 agaugg uc     cgaaguuug               uauuagguuggug  AAAAGUAAUUG    UUUUGCCauua a
 |||||| ||     |||||||||               |||||||||||||  |||||||||||    |||||||||||  
 ucuacu ag     guuucaaac               augauccgaccau  uuuuuauuaac    aaaacgguaau a
c      a  ucccu         cauuuccucuuuucu             uu           aaua           g 

Annotation confidence Not enough data

Genome context

chr8: 7418189-7418336 [-]

Mature ptr-miR-548i

• Accession: MIMAT0008223
• Description: Pan troglodytes ptr-miR-548i mature miRNA
• Sequence: 39 - AAAAGUAAUUGCGGAUUUUGCC - 60
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70