miRBase entry: ptr-mir-551b

Stem-loop ptr-mir-551b


Accession
MI0008769
Description
Pan troglodytes ptr-mir-551b precursor miRNA


Sequence

932 reads, 16.0 reads per million, 18 experiments
gaugugcucuccuggcccauGAAAUCAAGCGUGGGUGAGACCUggugcagaacgggaagGCGACCCAUACUUGGUUUCAGaggcugcgagaaua
.......((((.(((((..((((((((((.((((((....((((........))))......)))))).))))))))))..))))).))))...

Structure
gaugugc    c     ca          C      --GAGA    gug 
       ucuc uggcc  uGAAAUCAAG GUGGGU      CCUg   c
       |||| |||||  |||||||||| ||||||      ||||    
       agag gucgg  ACUUUGGUUC UACCCA      gggc   a
----aua    c     aG          A      GCGgaa    aag 


Annotation confidence High
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Genome context
chr3: 172245358-172245451 [+]

Database links

Mature ptr-miR-551b-5p

Accession MIMAT0052390
Description Pan troglodytes ptr-miR-551b-5p mature miRNA
Sequence 21 - GAAAUCAAGCGUGGGUGAGACCU - 43
Evidence not_experimental

Mature ptr-miR-551b-3p

Accession MIMAT0008232
Description Pan troglodytes ptr-miR-551b-3p mature miRNA
Sequence 60 - GCGACCCAUACUUGGUUUCAG - 80
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70