Stem-loop ptr-mir-590

Accession

MI0008798

Description

Pan troglodytes ptr-mir-590 precursor miRNA

Literature search

2 open access papers mention ptr-mir-590
(5 sentences)

Sequence

173 reads, 3.0 reads per million, 24 experiments

agccagucagaaauGAGCUUAUUCAUAAAAGUGCAGUauggugaagucaaucugUAAUUUUAUGUAUAAGCUAGUcucugauugaaacaugcagca
...((((((((.((.(((((((.(((((((.(((((..(((.....)))..))))).))))))).))))))).)).))))))))............

Structure

---------agc        a  G       U       G     Ua   u 
            cagucaga au AGCUUAU CAUAAAA UGCAG  ugg g
            |||||||| || ||||||| ||||||| |||||  ||| a
            guuagucu UG UCGAAUA GUAUUUU AUguc  acu a
acgacguacaaa        c  A       U       A     ua   g 

Annotation confidence High

Genome context

chr7: 75077878-75077973 [-]

Mature ptr-miR-590-5p

• Accession: MIMAT0052392
• Description: Pan troglodytes ptr-miR-590-5p mature miRNA
• Sequence: 15 - GAGCUUAUUCAUAAAAGUGCAGU - 37
• Evidence: not_experimental

Mature ptr-miR-590-3p

• Accession: MIMAT0008261
• Description: Pan troglodytes ptr-miR-590-3p mature miRNA
• Sequence: 55 - UAAUUUUAUGUAUAAGCUAGU - 75
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70