miRBase entry: ptr-mir-598

Stem-loop ptr-mir-598


Accession
MI0008804
Description
Pan troglodytes ptr-mir-598 precursor miRNA


Sequence

23685 reads, 199.0 reads per million, 24 experiments
gcuugaugaugcugcugaugcugGCGGUGAUCCCGAUGGUGUGAGCUggaaauggggugcUACGUCAUCGUUGUCAUCGUCAUCaucaucauccga
....(((((......(((((.((((((((((..((((((((((.(((........)))..))))))))))..)))))))))).))))))))))...

Structure
gcuu     ugcugc     c          CC          -A   gga 
    gauga      ugaug ugGCGGUGAU  CGAUGGUGUG  GCU   a
    |||||      ||||| ||||||||||  ||||||||||  |||    
    cuacu      acuaC ACUGCUACUG  GCUACUGCAU  ugg   a
-agc     ------     U          UU          cg   ggu 


Annotation confidence High
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Genome context
chr8: 10411361-10411456 [-]

Database links

Mature ptr-miR-598-5p

Accession MIMAT0052393
Description Pan troglodytes ptr-miR-598-5p mature miRNA
Sequence 24 - GCGGUGAUCCCGAUGGUGUGAGCU - 47
Evidence not_experimental

Mature ptr-miR-598-3p

Accession MIMAT0008267
Description Pan troglodytes ptr-miR-598-3p mature miRNA
Sequence 61 - UACGUCAUCGUUGUCAUCGUCAUC - 84
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70