Stem-loop ptr-mir-615

Accession

MI0008814

Description

Pan troglodytes ptr-mir-615 precursor miRNA

Sequence

92 reads, 1.0 reads per million, 18 experiments

cucgggaggggcgggagGGGGGUCCCCGGUGCUCGGAUcucgagggugcuuauuguucggUCCGAGCCUGGGUCUCCCUCUUccccccaaccccc
...(((..(((.((((((((((..(((((.((((((((..((((.(.......).)))))))))))))))))...)))))))))))))..)))..

Structure

cuc   ag   c          -UC     U        cu    g ug 
   ggg  ggg gggagGGGGG   CCCGG GCUCGGAU  cgag g  c
   |||  ||| ||||||||||   ||||| ||||||||  |||| |  u
   ccc  ccc cccUUCUCCC   GGGUC CGAGCCUg  gcuu u  u
-cc   aa   -          UCU     -        --    g ua 

Annotation confidence High

Genome context

chr12: 35743356-35743450 [-]

Mature ptr-miR-615-5p

• Accession: MIMAT0052394
• Description: Pan troglodytes ptr-miR-615-5p mature miRNA
• Sequence: 18 - GGGGGUCCCCGGUGCUCGGAU - 38
• Evidence: not_experimental

Mature ptr-miR-615-3p

• Accession: MIMAT0008277
• Description: Pan troglodytes ptr-miR-615-3p mature miRNA
• Sequence: 61 - UCCGAGCCUGGGUCUCCCUCUU - 82
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70