Stem-loop ptr-mir-616

Accession

MI0008815

Description

Pan troglodytes ptr-mir-616 precursor miRNA

Literature search

1 open access papers mention ptr-mir-616
(2 sentences)

Sequence

20 reads, 1.0 reads per million, 13 experiments

uagguaauuccuccacucaaaacccuccagugacuuccaugacaugaaacaggaAGUCAUUGGAGGGUUUGAGCAGaggaaugaccuguuuuaaaa
(((((.(((((((..((((((.((((((((((((((((.((........))))))))))))))))))))))))..))))))).)))))........

Structure

--------     a       ca      a                a  aca 
        uaggu auuccuc  cucaaa cccuccagugacuucc ug   u
        ||||| |||||||  |||||| |||||||||||||||| ||    
        gucca uaaggaG  GAGUUU GGGAGGUUACUGAagg ac   g
aaaauuuu     g       AC      -                -  aaa 

Annotation confidence Not enough data

Genome context

chr12: 32297798-32297893 [+]

Mature ptr-miR-616-3p

• Accession: MIMAT0008278
• Description: Pan troglodytes ptr-miR-616-3p mature miRNA
• Sequence: 55 - AGUCAUUGGAGGGUUUGAGCAG - 76
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70