Stem-loop ptr-mir-628

Accession

MI0008824

Description

Pan troglodytes ptr-mir-628 precursor miRNA

Sequence

1991 reads, 19.0 reads per million, 24 experiments

auagcuguugugucacuuccucAUGCUGACAUAUUUACUAGAGGguaaaauuaauaaccuUCUAGUAAGAGUGGCAGUCGAagggaagggcuca
........((.(((.((((((...((((.(((.(((((((((((((..........))))))))))))).))).))))....))))))))).))

Structure

auagcugu  u   a      -cAU    A   A             aaaa 
        ug guc cuuccu    GCUG CAU UUUACUAGAGGgu    u
        || ||| ||||||    |||| ||| |||||||||||||     
        ac cgg gaaggg    UGAC GUG GAAUGAUCUucca    u
--------  u   -      aAGC    G   A             auaa 

Annotation confidence Medium

Genome context

chr15: 36168583-36168676 [-]

Mature ptr-miR-628-5p

• Accession: MIMAT0052395
• Description: Pan troglodytes ptr-miR-628-5p mature miRNA
• Sequence: 23 - AUGCUGACAUAUUUACUAGAGG - 44
• Evidence: not_experimental

Mature ptr-miR-628-3p

• Accession: MIMAT0008287
• Description: Pan troglodytes ptr-miR-628-3p mature miRNA
• Sequence: 61 - UCUAGUAAGAGUGGCAGUCGA - 81
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70