Stem-loop ptr-mir-652

Accession

MI0008839

Description

Pan troglodytes ptr-mir-652 precursor miRNA

Literature search

3 open access papers mention ptr-mir-652
(6 sentences)

Sequence

1922 reads, 20.0 reads per million, 24 experiments

cgaauggcuaugcacugcACAACCCUAGGAGAGGGUGCCAUUcacauagacuauaauugAAUGGCGCCACUAGGGUUGUGcagugcacaaccuacac
.....((...((((((((((((((((((.....(((((((((((..((.....))..))))))))))).))))))))))))))))))...)).....

Structure

cgaau  cua                  GAGAG           ca  g 
     gg   ugcacugcACAACCCUAG     GGUGCCAUUca  ua a
     ||   ||||||||||||||||||     |||||||||||  || c
     cc   acgugacGUGUUGGGAUC     CCGCGGUAAgu  au u
cacau  aac                  ----A           ua  a 

Annotation confidence High

Genome context

chrX: 109699194-109699290 [+]

Mature ptr-miR-652-5p

• Accession: MIMAT0052396
• Description: Pan troglodytes ptr-miR-652-5p mature miRNA
• Sequence: 19 - ACAACCCUAGGAGAGGGUGCCAUU - 42
• Evidence: not_experimental

Mature ptr-miR-652-3p

• Accession: MIMAT0008302
• Description: Pan troglodytes ptr-miR-652-3p mature miRNA
• Sequence: 60 - AAUGGCGCCACUAGGGUUGUG - 80
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70