Stem-loop ptr-mir-708

Accession

MI0008852

Description

Pan troglodytes ptr-mir-708 precursor miRNA

Literature search

3 open access papers mention ptr-mir-708
(8 sentences)

Sequence

7932 reads, 62.0 reads per million, 24 experiments

aacugcccucAAGGAGCUUACAAUCUAGCUGGGgguaaaugacuugcacaugaacacAACUAGACUGUGAGCUUCUAGAgggcaggg
..((((((((.(((((((((((.(((((.((...((..(((.......)))..)).)).))))).))))))))))).))))))))..

Structure

aa        A           A     C  GGg  aa   ac 
  cugcccuc AGGAGCUUACA UCUAG UG   gu  aug  u
  |||||||| ||||||||||| ||||| ||   ||  |||  u
  gacgggAG UCUUCGAGUGU AGAUC Ac   ca  uac  g
gg        A           C     A  --a  ag   ac 

Annotation confidence High

Genome context

chr11: 79477418-79477504 [-]

Mature ptr-miR-708-5p

• Accession: MIMAT0008315
• Description: Pan troglodytes ptr-miR-708-5p mature miRNA
• Sequence: 11 - AAGGAGCUUACAAUCUAGCUGGG - 33
• Evidence: not_experimental

Mature ptr-miR-708-3p

• Accession: MIMAT0052402
• Description: Pan troglodytes ptr-miR-708-3p mature miRNA
• Sequence: 58 - AACUAGACUGUGAGCUUCUAGA - 79
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70