Stem-loop ptr-mir-873

Accession

MI0008863

Description

Pan troglodytes ptr-mir-873 precursor miRNA

Literature search

2 open access papers mention ptr-mir-873
(2 sentences)

Sequence

6180 reads, 93.0 reads per million, 15 experiments

gugugcauuuGCAGGAACUUGUGAGUCUCCUauugaaaaugaacaGGAGACUGAUGAGUUCCCGGGAacacccaca
(((.(..(((.(.(((((((((.((((((((.((.......)).)))))))).))))))))).).)))..).))).

Structure

-   u ca   G A         G        a  ga 
 gug g  uuu C GGAACUUGU AGUCUCCU uu  a
 ||| |  ||| | ||||||||| |||||||| ||  a
 cac c  aAG G CCUUGAGUA UCAGAGGa aa  a
a   c ac   G C         G        c  gu 

Annotation confidence Medium

Genome context

chr9: 29474515-29474590 [-]

Mature ptr-miR-873-5p

• Accession: MIMAT0008324
• Description: Pan troglodytes ptr-miR-873-5p mature miRNA
• Sequence: 11 - GCAGGAACUUGUGAGUCUCCU - 31
• Evidence: not_experimental

Mature ptr-miR-873-3p

• Accession: MIMAT0052406
• Description: Pan troglodytes ptr-miR-873-3p mature miRNA
• Sequence: 46 - GGAGACUGAUGAGUUCCCGGGA - 67
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70