Stem-loop ptr-mir-874

Accession

MI0008864

Description

Pan troglodytes ptr-mir-874 precursor miRNA

Sequence

3397 reads, 35.0 reads per million, 24 experiments

uuagcccugCGGCCCCACGCACCAGGGUAAgagagacucucgcuucCUGCCCUGGCCCGAGGGACCGAcuggcuggg
((((((...(((.(((.((..((((((((((.(((...))).))...))))))))..)).))).)))...)))))).

Structure

-      cug   C   A  CA        ---  a   a 
 uuagcc   CGG CCC CG  CCAGGGUA   Ag gag  
 ||||||   ||| ||| ||  ||||||||   || ||| c
 ggucgg   GCC GGG GC  GGUCCCGU   uc cuc  
g      ucA   A   A  CC        Ccu  g   u 

Annotation confidence High

Genome context

chr5: 137645227-137645303 [-]

Mature ptr-miR-874-5p

• Accession: MIMAT0052407
• Description: Pan troglodytes ptr-miR-874-5p mature miRNA
• Sequence: 10 - CGGCCCCACGCACCAGGGUAA - 30
• Evidence: not_experimental

Mature ptr-miR-874-3p

• Accession: MIMAT0008325
• Description: Pan troglodytes ptr-miR-874-3p mature miRNA
• Sequence: 47 - CUGCCCUGGCCCGAGGGACCGA - 68
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70