Stem-loop ptr-mir-885

Accession

MI0008867

Description

Pan troglodytes ptr-mir-885 precursor miRNA

Sequence

27303 reads, 214.0 reads per million, 22 experiments

ccgcacucucUCCAUUACACUACCCUGCCUCUUCuccaugagAGGCAGCGGGGUGUAGUGGAUagagcacggg
(((..((((.(((((((((((.(((((((((((......))))))))).))))))))))))).))))..))).

Structure

-   ca    c           A  -         Cu 
 ccg  cucu UCCAUUACACU CC CUGCCUCUU  c
 |||  |||| ||||||||||| || |||||||||   
 ggc  gaga AGGUGAUGUGG GG GACGGAgag  c
g   ac    U           -  C         ua 

Annotation confidence High

Genome context

chr3: 10665673-10665745 [-]

Mature ptr-miR-885-5p

• Accession: MIMAT0052409
• Description: Pan troglodytes ptr-miR-885-5p mature miRNA
• Sequence: 11 - UCCAUUACACUACCCUGCCUCUUC - 34
• Evidence: not_experimental

Mature ptr-miR-885-3p

• Accession: MIMAT0008328
• Description: Pan troglodytes ptr-miR-885-3p mature miRNA
• Sequence: 43 - AGGCAGCGGGGUGUAGUGGAU - 63
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70