Stem-loop ptr-mir-887

Accession

MI0008869

Description

Pan troglodytes ptr-mir-887 precursor miRNA

Sequence

513 reads, 8.0 reads per million, 23 experiments

ugcagaUCCUUGGGAGCCCUGUUAGACUcuggauuuuacacuuggaGUGAACGGGCGCCAUCCCGAGGcuuugcacag
((((((.((((((((((((((((..(((((((.........))))))).)))))).))..)))))))).))))))...

Structure

---      U        --  -      AG       auu 
   ugcaga CCUUGGGA  GC CCUGUU  ACUcugg   u
   |||||| ||||||||  || ||||||  |||||||   u
   acguuu GGAGCCCU  CG GGGCAA  UGagguu   a
gac      c        AC  C      -G       cac 

Annotation confidence Medium

Genome context

chr5: 16254571-16254648 [+]

Mature ptr-miR-887-5p

• Accession: MIMAT0052410
• Description: Pan troglodytes ptr-miR-887-5p mature miRNA
• Sequence: 7 - UCCUUGGGAGCCCUGUUAGACU - 28
• Evidence: not_experimental

Mature ptr-miR-887-3p

• Accession: MIMAT0008330
• Description: Pan troglodytes ptr-miR-887-3p mature miRNA
• Sequence: 47 - GUGAACGGGCGCCAUCCCGAGG - 68
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70