Stem-loop ptr-mir-99b

Accession

MI0008891

Description

Pan troglodytes ptr-mir-99b precursor miRNA

Literature search

1 open access papers mention ptr-mir-99b
(1 sentences)

Sequence

43582 reads, 505.0 reads per million, 24 experiments

gcaccCACCCGUAGAACCGACCUUGCGgggccuucgccgcacaCAAGCUCGUGUCUGUGGGUCCGUguc
((((..(((((((((..(((.((((.(.(((....))).)...)))).)))..)))))))))..)))).

Structure

-    cC         AC   C    --C g   c 
 gcac  ACCCGUAGA  CGA CUUG   G ggc u
 ||||  |||||||||  ||| ||||   | |||  
 ugUG  UGGGUGUCU  GCU GAAC   c ccg u
c    CC         GU   C    aca g   c 

Annotation confidence High

Genome context

chr19: 53915419-53915487 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptr-mir-99b

Mature ptr-miR-99b-5p

• Accession: MIMAT0008351
• Description: Pan troglodytes ptr-miR-99b-5p mature miRNA
• Sequence: 6 - CACCCGUAGAACCGACCUUGCG - 27
• Evidence: not_experimental

Mature ptr-miR-99b-3p

• Accession: MIMAT0052411
• Description: Pan troglodytes ptr-miR-99b-3p mature miRNA
• Sequence: 44 - CAAGCUCGUGUCUGUGGGUCCGU - 66
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70